PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0229s00150.1
Common NameLR48_Vigan11g130600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 272aa    MW: 29313 Da    PI: 6.6711
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0229s00150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.5e-161250747
                      HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      eEd ++v a++ +G++ W++Iar ++ gRt++ +k++w++ 
  Vang0229s00150.1 12 EEDRIIVAAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 50
                      9***************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.925155IPR017930Myb domain
SMARTSM007171.1E-10553IPR001005SANT/Myb domain
CDDcd001676.75E-121051No hitNo description
PfamPF002494.2E-131150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-181152IPR009057Homeodomain-like
SuperFamilySSF466891.09E-121153IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MLVSLLGLTN NEEDRIIVAA HAIHGNKWAA IARLLPGRTD NAIKNHWNST LRRRGVELDK  60
IKLESGNFME DASLEKAKAS SEDTLSCGDV SLKSSEGRDV SSVDIMDDKS DGKAQAEGQL  120
HHKVKDPPTL FRPVARVSAF NVYHSNDVIQ PSTSIQRPVP KQGPILQSSR PDMEFCRMVE  180
GICGDQAVPH QCGHGCCASP NGRKSESSLL GPEFIEFSEP PSFPNFELAA IAADISNLAW  240
LKSGLENSSV KMMGNTSGSA MSNGSRIHIG H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mbk_A2e-171254951MYB PROTO-ONCOGENE PROTEIN
1mbj_A2e-171254951MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515157.10.0PREDICTED: transcriptional activator Myb
TrEMBLA0A0L9VTT20.0A0A0L9VTT2_PHAAN; Uncharacterized protein
STRINGGLYMA01G26650.11e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.13e-71myb domain protein 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]